J. Dairy Sci. 2008. 91:4355-4364. doi:10.3168/jds.2008-1128
© 2008 American Dairy Science Association ®
Genetic Analysis of Somatic Cell Score in Danish Holsteins Using a Liability-Normal Mixture Model
P. Madsen*,1,
M. M. Shariati*,
and
J. Ødegård
,
* Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, University of Aarhus, PO Box 50, DK-8830 Tjele, Denmark
Department of Animal Science, Faculty of Agriculture, University of Yasuj, 75914-353 Yasuj, Iran
NOFIMA Marin, PO Box 5010, N-1432 Ås, Norway
Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, PO Box 5003, N-1432 Ås, Norway
1 Corresponding author: Per.Madsen{at}agrsci.dk
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ABSTRACT
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Mixture models are appealing for identifying hidden structures affecting somatic cell score (SCS) data, such as unrecorded cases of subclinical mastitis. Thus, liability-normal mixture (LNM) models were used for genetic analysis of SCS data, with the aim of predicting breeding values for such cases of mastitis. Here, putative mastitis statuses and breeding values for liability to putative mastitis were inferred solely from SCS observations. In total, there were 395,906 test-day records for SCS from 50,607 Danish Holstein cows. Four different statistical models were fitted: A) a classical (nonmixture) random regression model for test-day SCS; B1) an LNM test-day model assuming homogeneous (co)variance components for SCS from healthy (IMI-) and infected (IMI+) udders; B2) an LNM model identical to B1, but assuming heterogeneous residual variances for SCS from IMI- and IMI+ udders; and C) an LNM model assuming fully heterogeneous (co)variance components of SCS from IMI- and IMI+ udders. For the LNM models, parameters were estimated with Gibbs sampling. For model C, variance components for SCS were lower, and the corresponding heritabilities and repeatabilities were substantially greater for SCS from IMI- udders relative to SCS from IMI+ udders. Further, the genetic correlation between SCS of IMI- and SCS of IMI+ was 0.61, and heritability for liability to putative mastitis was 0.07. Models B2 and C allocated approximately 30% of SCS records to IMI+, but for model B1 this fraction was only 10%. The correlation between estimated breeding values for liability to putative mastitis based on the model (SCS for model A) and estimated breeding values for liability to clinical mastitis from the national evaluation was greatest for model B1, followed by models A, C, and B2. This may be explained by model B1 categorizing only the most extreme SCS observations as mastitic, and such cases of subclinical infections may be the most closely related to clinical (treated) mastitis.
Key Words: Bayesian method mastitis mixture model somatic cell score
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INTRODUCTION
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Breeding programs using SCC records in genetic selection for improved udder health to date have been based on either cross-sectional models (e.g., lactation mean SCS) or test-day models (e.g., repeatability models, random regression models) for genetic evaluations. These models are typically focused on selecting animals with the lowest average SCS. Several studies have found a positive genetic correlation between SCS level and risk of clinical mastitis (Mrode and Swanson, 1996). However, simply selecting for lower average SCS might not be the most optimal way of utilizing SCC data in selection for improved udder health. To illustrate this, Green et al. (2004) found that the within-lactation variation of test-day SCS and the maximum test-day SCS were the best indicators of clinical mastitis, rather than mean SCS. Lactation average and standard test-day models for SCS do not discriminate between SCS from healthy and diseased animals (because health status is usually unknown), and will thus assume identical location and dispersion parameters for SCS irrespective of infection status. Further, selection for lower SCS might favor not only cows having lower incidence of IMI, but also cows having lower levels of SCC when healthy ("baseline" SCC). Detilleux and Leroy (2000) have argued that high "baseline" SCC may increase resistance to IMI, and they have therefore suggested the use of mixture models for analysis of SCC test-day data.
Previous studies (Detilleux et al., 1997; de Haas et al., 2004) have found that SCC and the proportion of different somatic cell types differ dramatically with respect to IMI status. Generally, the proportion of poly-morphonuclear neutrophils in SCC changes dramatically, from mainly 5 to 20% in healthy glands to more than 95% in infected glands. Consequently, SCS from udders with or without IMI might be partially different traits and might be under different genetic control. Further, the cows response to infection, with respect to both increase in SCC and change in composition, might be associated with the subsequent recovery rate.
Two-component normal mixture models have been developed, taking the mixture distribution of SCS into account, by using either Bayesian (Ødegård et al., 2003) or maximum likelihood techniques (Gianola et al., (2004). In these models, SCS was assumed to be normally distributed, with either homogeneous (Gianola et al., 2004) or heterogeneous residual variances (Ødegård et al., 2003), and with location parameters including both systematic and random effects. The expected increase in test-day SCS as a result of IMI was accounted for by including the effect of putative IMI status among the location parameters for SCS (in addition to effects such as herd-year-season, age at calving, and stage of lactation). However, these models assumed identical a priori probabilities of IMI for all animals and all observations within animal. Previous analyses of clinical mastitis field data have identified numerous systematic (e.g., herd-year-season, age at calving, stage of lactation) and random effects (e.g., genetic, permanent environment) that affect the probability of mastitis infection (Chang et al., 2004). Hence, assigning the same prior probability of IMI to all animals at all test-days is not realistic in real data. Further, these mixture models did not provide a sufficient tool for genetic selection for a lower probability of mastitis, given the observed SCS, because all genetic effects were calculated for the SCS level, adjusted for mastitis effects. A more realistic hierarchical statistical model was developed by Ødegård et al. (2005), based on the method and model described in Ødegård et al. (2003). The new model was described as a liability-normal mixture (LNM) model.
In the LNM, udder health status (which is an unobserved binary variable) is assumed to be fully determined by an unobserved underlying liability (threshold model). Further, location parameters for the liability may include both systematic and random effects, allowing for the probability that IMI may differ among animals (e.g., because of herd-year-season, genetic, and permanent environmental effects) as well as between observations within animal (e.g., because of effects of lactation stage, herd-test-day). Based on observed test-day SCS, the LNM model predicts genetic effects for both SCS and the unobserved liability to IMI (mastitis), where the latter can be used in genetic selection for improved udder health. As previously stated, genetic level of "baseline" SCS may have some relevance for risk of subsequent infection, and may therefore contain valuable information for genetic improvement of udder health. Such potentially valuable information was used by including a covariance structure between the random effects for SCS and liability to IMI in the model.
The original LNM model (Ødegård et al., 2003) assumed that random animal effects (genetic and nongenetic) were independent of IMI categories. This assumption could be relaxed by introducing separate, but possibly correlated, random animal effects (genetic and nongenetic) for SCS in healthy (IMI-) and diseased (IMI+) cows. Because both IMI categories can be represented within the test-day observations of a single cow (although not at the same time), it should be possible to obtain estimates describing this covariance structure. This results in 2 breeding values for SCS (under IMI- and IMI+) for all animals in the relationship matrix, and in 2 nongenetic animal effects for all animals with data.
Our first aim was to implement this idea in a modified LNM model and apply it on real test-day SCS data. The second aim was to compare its suitability with simpler models for use in practical selection for improved resistance to mastitis.
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MATERIALS AND METHODS
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Data
A data set consisting of monthly SCS records collected from 10 to 315 d postpartum from 50,607 first-lactation Danish Holstein cows was extracted from the Danish national cattle database. To be included, the following criteria were required: calving from 1990 through 2003, age at calving from 18 through 38 mo, and belonging to a herd with at least 5 primiparous cows per year in the period 1999 through 2003. Summary statistics for the sampled data are provided in Table 1
.
Method
The observed test-day SCS in the milk of a cow can be viewed as a variable drawn from 2 (or more) distributions, depending on the udder health status of the cow on the test-day of sampling. In its simplest case (which will be assumed here), the test-day udder health status of the cow may be categorized as either with or without IMI (i.e., "mastitic" or "healthy"). Normally, infections (both clinical and subclinical) will result in a rapid increase in the SCC level. However, in field data, SCC is normally not recorded for cows with observed clinical mastitis. Thus, unobserved subclinical infections are probably more important with respect to the observed test-day SCC in routinely recorded field data. As a consequence, test-day SCC may have at least 2 different distributions depending on the IMI status on the actual test day. These distributions will differ with respect to expected values, and possibly also with respect to dispersion parameters. The test-day IMI status of a cow (e.g., presence or absence of subclinical mastitis) is typically unknown in field data. Here, we assume that SCS, defined as the natural logarithm of test-day SCC, follows a 2-component normal mixture distribution.
Setting and notation are as in Ødegård et al. (2005). In short, the data consist of n measurements of SCS. A 2-component normal mixture model poses that the ith measurement of SCS, given some location and dispersion parameters (a) and probabilities (P) has the mixture density
 | [1] |
with P = [P1, P2, ... , Pn] where Pi is the a priori probability that SCSi is drawn from distribution N() [i.e., the a priori probability of being infected (IMI+)], whereas (1 - Pi) is the a priori probability that SCSi is drawn from N*() [i.e., the a priori probability of not being infected (IMI-)]. Further, fi (
), gi (
), fi*(
), and gi*(
) are functions of the parameter vector
. Typically, fi (
) and fi*(
) are linear combinations of fixed and random effects, gi*(
) =
2e0SCS and gi(
) =
2e1SCS, for all i = 1, 2, ..., n, where
2e0SCS and
2e1SCS are variance parameters. Given
and P, observations were assumed to be conditionally independent, so that the joint density of the data vector SCS is
 | [2] |
Estimation is facilitated by augmenting the density above with auxiliary binary indicator (IMI –
0, IMI+
1) variables Zi (i = 1, 2, ..., n). Assuming that the indicator variables are Bernoulli distributed and are conditionally independent a priori, one can write
 | [3] |
Given P, Z does not depend on
, and Pr(Zi = 1 Pi) = Pi is the prior probability that the status of i is IMI+, allowing for individual prior probabilities of mastitis.
An underlying continuous random variable, called liability ( ), is assumed, which determines the mastitis status associated with each observation (Zi). It is assumed that Zi switches from 0 to 1 if liability exceeds a given threshold T (assumed T = 0). Further, according to Zi, the "true" distribution of SCS switches from N*() to N(), and putative mastitis status may therefore be inferred from the observed SCS. Thus, the a priori probability of IMI+ for a specific SCS observation i can be written as
 | [4] |
so that
As in Ødegård et al. (2005), it is assumed that
 | [5] |
implying that the residual correlation between SCS and liability is set to zero.
Modeling SCS and Liabilities
Let
where
and
are vectors of "fixed" (β), random herd-test-day (h), random additive genetic (a), and random permanent environmental (pe) effects on SCS and liability to mastitis, where the subvector β0SCS, a0SCS, or pe0SCS includes effects affecting SCS in all cows irrespective of IMI status, whereas β1SCS, a1SCS, or pe1SCS includes effects peculiar to SCS in cows with IMI. Further, H0 is the 2 x 2 (co)variance matrix of herd-test-day effects, G0 is the 3 x 3 (co)variance matrix of additive genetic effects, and Pe0 is the 3 x 3 (co)variance matrix of permanent environmental effects;
e0SCS2 and
e1SCS2 are the residual variances of SCS in IMI- and IMI+ classes, respectively. Given IMI status (Z) and a, SCS can be modeled as a Gaussian trait, allowing for heterogeneous (co)variance components for the 2 disease categories. The density of the conditional distribution of all SCS, given Z = z and a is
 | [6] |
where I(.) is an indicator function taking the value of 1 if the condition (.) is true and zero otherwise.
It is assumed that
where x' and w' with appropriate subscripts are incidence row vectors. Further, it is assumed that the
i, given a are mutually independent, so that the density of the 
vector, given
is
 | [7] |
where the distribution of
, given
, is
With this structure, [4] is equivalent to
 | [8] |
where
() is the standard normal cumulative distribution function and
i is the expectation of the liability of observation i, conditionally on β
, h
, a
, and pe
.
Bayesian Structure
Conditional Density of SCS.
The conditional distribution of the data given the parameters (P,
) is p (SCS P,
) as in [2]. Further, the conditional distribution of SCS, given
and Z, is given in [6]. Also from [5],
Prior Density of All Unknown Parameters.
The joint prior density of all unknown parameters, including the liabilities (
), is
 | [9] |
Given 
, Z is completely specified, and Pr(Z = z|
) is therefore a degenerate distribution. The density p (
|
) is defined in [7], and the density p (
) is
 | [10] |
where
and
were assigned bounded uniform priors. To achieve vague priors, the absolute values of the bounds were large. Further, to avoid "label-switching" problems (Mclachlan and Peel, 2000), constraints must be imposed on parameters of the SCS distributions of putative IMI- and IMI+ animals; for example, the mean SCS in the IMI- group was set to be lower than that in the IMI+ group.
Herd-test-day effects (h), additive breeding values (a), and permanent environmental effects (pe) were assumed to be normally distributed, with the densities
 | [11] |
 | [12] |
 | [13] |
where A is the additive relationship matrix with dimension qa; Ih and Ipe are identity matrices, with dimensions qh (number of herd-test-days) and qpe (number of individuals with at least one SCS record); and H0, G0, and Pe0 are as previously defined.
Joint Posterior Density.
The augmented joint posterior density of all unknowns is
 | [14] |
with p (
,
,Z = z) as defined in [9].
Fully Conditional Posterior Distributions.
As in Ødegård et al. (2005), all fully conditional posterior distributions have a standard form, given Z and . The required posterior distributions are as in a linear Gaussian model: 1) the conditional posterior distribution of each element of β is normal, truncated in some interval [d1, d2]; 2) the conditional distributions of h, a, and pe are multivariate normal; 3) the densities of H0, G0, and Pe0 are inverse Wishart; and 4) the conditional distributions of
2e0SCS and
2e1SCS are inverse gamma
Further,
 | [15] |
with p(
|
,Z =z, SCS) = p(
|
,Z= z), because the liabilities are independent of SCS, given ± and Z = z. The parameter
i (Pr(Zi =1 SCSi ,
)) of the fully conditional posterior distribution of Zi is
 | [16] |
where
i is the expected liability. Hence, Zi can be sampled from a Bernoulli distribution with probability of success (putative mastitis)
i. Subsequently, given Zi,
i can be sampled from a distribution with density
 | [17] |
In other words, the fully conditional distribution of
i, given Zi, is a truncated standard normal distributionTN(
i|
) , with right truncation for Zi = 0, and left truncation for Zi = 1.
The Gibbs sampling procedure, as described in Ødegård et al. (2005) and implemented in the DMU package (Madsen and Jensen, 2007), was used for the analysis. In total, 120,000 cycles were generated; the first 20,000 were discarded as burn-in, and posterior means and standard deviations were calculated based on retaining samples from every 10th cycle of the remaining cycles.
Model Comparison
For comparison purposes, 4 statistical models were used to analyze these data, a nonmixture repeatability model for test-day SCS (A); 2 LNM models assuming identical random effects irrespective of IMI status, one assuming identical
2e0SCS and
2e1SCS (B1), and one accommodating specific residual variances for SCS in the 2 mixture components (B2, as in Ødegård et al., 2005); and an LNM model assuming the random effects to be mixtures depending on IMI status (C). More specifically,
A:
B1 and B2:
C:
where β0SCS and β
vectors include effects of age and regression coefficients for days carrying calf, proportion of Holstein genes, total breed heterozygosity, Legendre polynomials of DIM up to the second order, and a Wilmink polynomial (e–0.09DIM) (adapted from Finnish work on an SCS test-day model; Negussie et al., 2006), with X as the appropriate incidence matrix. The vector β1SCSC includes only the systematic effect of mastitis on the SCS level, and is associated with the observations through a diagonal matrix Mz. The latter is a diagonalization of Z (the vector containing the assumed health status for all observations).
It should be noted that models A, B1, and B2 are submodels of model C, because model B2 can be obtained from model C by restricting the elements of a1SCS and pe1SCS to be null, model B1 can be obtained from model B2 by restricting the residual variances to be identical, and model A can be obtained from B1, B2, and C by restricting Mz to be a null matrix and assume no liability variation.
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RESULTS AND DISCUSSION
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The posterior means of putative mastitis frequencies (mixing proportions) and estimated means for test-day SCS and SCC of cows in the IMI- and IMI+ classes for the 3 LNM models are shown in Table 2
. The models B2 and C resulted in almost similar mixing proportions of approximately 30% and estimated SCC in the IMI- and IMI+ groups. The typical SCC level for putatively mastitic cows predicted by using these models (157,500 and 146,000 cells/mL for models B2 and C, respectively) are lower than the expected level of SCC in cows with clinical mastitis (Lam et al., 1997). On the contrary, model B1 allocates only 10% of records to the IMI+ class with a rather high SCC level (787,500 cells/mL). In model B1, the heterogeneity in residual variances in mixture components is not taken into account. This could possibly explain why only records with very high SCS are allocated to the IMI+ component. It should be noted, however, that putative mastitis based on SCC records is probably more closely connected with subclinical cases of mastitis than with clinical cases, because farmers usually do not take samples from cows with clinical mastitis. In general, this will lead to missing observations for SCC from cows with clinical mastitis on a given test day. Implementing a mixture model with 3 components representing healthy, mild subclinical mastitis, and severe subclinical mastitis classes might be appealing in future research
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Table 2. Posterior means and standard deviations (in parentheses) of the mixing proportion and overall mean SCS (SCC) in 2 components of the mixture distribution estimated by using the liability-normal mixture models for test-day SCS
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Estimated (co)variance components for SCS (IMI-), SCS (IMI+), and liability to putative mastitis by using LNM model C are presented in Table 3
. Generally, as expected, a greater degree of SCS variation was found for IMI+ compared with IMI-. By going from IMI- to IMI+, permanent environmental and genetic variances increased by 24 to 47%, whereas residual variance increased by approximately 1,000%. Hence, SCS heritability and repeatability were considerably lower for IMI+ (0.08 and 0.29, respectively) than for IMI- (0.19 and 0.76, respectively). Both the heritability and the repeatability of SCS (IMI-) were considerably greater than the corresponding parameters from model A. The heritability for liability to putative mastitis was 0.07, which is in agreement with the most commonly reported estimates for this trait (Heringstad et al., 2001). Estimated genetic and permanent environmental correlations between SCS (IMI–) and SCS (IMI+) were 0.61 and 0.45, respectively, indicating that cows having a high SCS when healthy are also more likely to have a greater SCS when having an IMI. At the same time, it suggests that SCS (IMI–) and SCS (IMI+) can be assumed as 2 different but correlated traits (Robertson, 1959). The estimated genetic correlation between SCS (IMI–) and liability to putative mastitis was 0.30, indicating that a high genetic level for SCS in healthy animals may have an unfavorable, but not substantial, effect on the susceptibility to IMI. Hence, there is no evidence for the hypothesis that selection for lower "baseline" SCS would result in deterioration of mastitis resistance. This result, as well as the correlation between SCS (IMI+) and liability to putative mastitis of 0.54, indicates that selection against high SCS will improve mastitis resistance. However, in interpreting these correlations, one should always keep in mind that they are between mastitis and SCS corrected for phenotypic mastitis effects, and are therefore expected to be lower than in a classical model for SCS and mastitis.
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Table 3. Posterior means and standard deviations (in parentheses) from liability-normal mixture model C for genetic (G),1 permanent environmental (Pe),1 and residual (R) (co)variance components for the SCS (IMI–), SCS (IMI+), and liability
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The positive correlation between SCS (IMI+) and putative mastitis may indicate that the cows with poor resistance are not only more likely to be infected, but if infected, infection may be more serious, with a larger increase in SCS as a consequence. Similarly, a high SCS (IMI–) level may indicate some kind of constant stress of the udder, and may therefore be correlated with risk of infection. Similarly, cows having positive permanent environmental effects for SCS level, irrespective of IMI class, seem to be more susceptible to putative mastitis. However, these results should be interpreted with caution because high "baseline" levels of SCS may be confounded with increased probability of putative mastitis.
Table 4
has estimates of residual variances, heritabilities, and repeatabilities for the models A, B1, B2, and C. The residual variance for the repeatability model A is twice the one from LNM model B1 (0.604 vs. 0.295), which is because classical SCS models do not take mean differences of mixture components into account (Ødegård et al., 2005; Boettcher et al., 2007). This also holds for genetic and permanent environmental variance components (not shown). Mean SCS equal to 4.30 and 6.67 for IMI– and IMI+ groups (Table 2
) and a common residual variance equal to 0.295 (Table 4
) represent a mixture distribution with well-separated components for model B1. By contrast, LNM models B2 and C produced highly overlapping mixture components. For these models, estimated means of mixture components were not far apart (Table 2
), and residual variance for putatively infected cows (
e1SCS2) was very large (Table 4
). Further, LNM models B2 and C yielded almost identical posterior means of residual variance for healthy cows (
e0SCS2), whereas the posterior mean of residual variance for mastitic cows (
e1SCS2) from model B2 was larger than the one from model C. The reduction in residual variance for model C indicates that this model fits the data better than model B2, probably because model C allows for different genetic and permanent environmental variances in the 2 classes. The variability in heritabilities and repeatabilities for different models is mostly determined by the magnitude of their residual variances.
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Table 4. Estimates and standard deviations (in parentheses)1 of residual variances, heritabilities, repeatabilities, and correlations among traits for repeatability model (A) and linear-normal mixture models2
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The LNM model predicts genetic effects for the unobserved liability to putative mastitis, and this can be used in genetic selection for improved udder health. For this reason, model comparison was chosen to be based on the correlation between predicted breeding values for the selection criteria in each model (EBV for SCS in model A, and EBV for liability to putative mastitis in models B1, B2, and C) and sire EBV for mastitis resistance, based on national data on clinical (treated) mastitis for lactations 1 to 3 (Danish Cattle Federation, 2006). These correlations were calculated based on 4,410 sires with both national EBV for clinical mastitis and EBV for the selection criteria in this study. If clinical mastitis is the trait of interest, the direct correlation between EBV for the different models with the EBV from the national evaluation is expected to be proportional to the accuracy of selection for the subset of data used in this study. Generally, the EBV of model B1 showed the best agreement with EBV for clinical mastitis in all lactations (Table 5
), indicating an increase in accuracy of selection of 6 to 10% over what can be obtained with a classical SCS model (model A). The more advanced LNM models (B2 and C) showed similar or lower agreement with EBV for clinical mastitis compared with model A (–12 to 7%). This study was based on a data set with a limited number of records. Therefore, reliabilities of EBV for the selection criteria in this study (0.38, 0.26, 0.29, and 0.29 for models A, B1, B2, and C, respectively) were much lower than corresponding reliabilities of national EBV for clinical mastitis (approximately 0.65). A rough estimate of the genetic correlation between 2 traits can be calculated by using the correlation between EBV for these traits adjusted for their reliabilities as described by Calo et al. (1973). Based on this method, the estimated genetic correlations between clinical mastitis and the selection criteria in the present study for the first lactation were 0.49, 0.66, 0.58, and 0.61 for models A, B1, B2, and C, respectively. However, it should be noted that clinical mastitis is not necessarily the same trait as subclinical mastitis, and the most efficient models in identifying subclinical cases of mastitis may therefore not have the greatest EBV correlation with clinical mastitis.
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Table 5. Pearson correlations between predicted breeding values for the models under study and official breeding values for liability to mastitis1
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As mentioned above, LNM model B1 probably cannot differentiate the SCS observations from cows with mild subclinical cases from the SCS of healthy cows. Therefore, it seemingly allocates only the most extreme SCS records to the IMI+ component. Because "extreme" subclinical infections probably are those most closely related to clinical infections (because they are more likely to end up as treatments), this may explain the greater genetic correlation with clinical mastitis when using model B1. Studies with larger data sets may reveal whether this is a general advantage of this model or not. Further, because the effect of mastitis on the SCS level is not accounted for in classical SCS models (model A), the most extreme cases of subclinical infections, causing the most severe and sustained increases in SCS level, will likely have a substantial impact on the average SCS level, and thus on the EBV, compared with mild subclinical infections. This may also contribute to the relatively good agreement between EBV for clinical mastitis and EBV for SCS when using model A.
To compare the performance of the LNM submodels, correlations among predicted breeding values for liability to putative mastitis and correlation between phenotypic probabilities for mastitis when using the different LNM models were calculated (Table 6
). Predictions from model B2 and model C showed correlations near unity, indicating that one can implement the simpler model (B2) if predicting breeding values for liability to mastitis is the target. The full LNM model (C) is greatly demanding computationally. Therefore, reducing the number of parameters and high dimensional genetic effects can lower the computing costs accordingly.
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Table 6. Correlations among predicted breeding values for liability to mastitis (above the diagonal) and correlations between putative mastitis probabilities predicted for single records (below the diagonal) for 3 liability-normal mixture models
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CONCLUSIONS
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Mixture models are useful for identifying hidden structures affecting data, such as unrecorded cases of subclinical mastitis affecting test-day SCS. Using LNM models, variance components for SCS were lower, and the corresponding heritabilities and repeatabilities were substantially greater for SCS from healthy udders relative to SCS from infected udders. Further, cows having high SCS when healthy seem more likely to have high SCS when infected. Genetic and permanent environmental correlations between SCS (IMI–) and liability to putative mastitis were moderately positive, whereas these correlations were greater for the IMI+ component. Heritability for liability to putative mastitis on a test-day level was close to the most commonly reported estimates for liability to clinical mastitis. When using this model, selection could be based on EBV for liability to putative mastitis rather than by crudely selecting for lower SCS level. Still, no other data sources besides SCS test-day data are needed. Genetic correlation between liability to putative mastitis, based on the LNM model, and liability to clinical mastitis can be used to assess the usefulness of the new methodology. The estimates obtained in this study are based on a sample data set and should therefore be verified in future studies involving more data. Further improvements could be an extension to a mixture model with at least 3 mixing components (i.e., healthy, mild IMI, severe IMI) and including the observed clinical mastitis cases as a new trait in a multiple trait LNM model.
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ACKNOWLEDGEMENTS
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This research was financially supported by a grant form the Danish Cattle Federation (Aarhus, Denmark). The Danish Agricultural Advisory Service, Aarhus, Denmark, is acknowledged for providing data.
Received for publication February 27, 2008.
Accepted for publication June 26, 2008.
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