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Departamento de Nutrición, Bromatología y Tecnología de los Alimentos Facultad de Veterinaria Universidad Complutense, 28040 Madrid, Spain
Corresponding author: I. González; e-mail: gonzalzi{at}vet.ucm.
| ABSTRACT |
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Key Words: polymerase chain reaction cow milk sheep and goat milk 12S ribosomal ribonucleic acid gene
| INTRODUCTION |
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So far, many different analytical approaches, such as immunological, electrophoretic, and chromatographic techniques, have been developed for species identification of milk and dairy products. Among these, capillary electrophoresis (Molina et al., 1999); 2-dimensional electrophoresis (Chianese et al., 1990); isoelectric focusing of milk caseins (Addeo et al., 1990; Moio et al., 1990), which is the European Community reference method for detection of cows milk in non-bovine dairy products (EC regulation no. 1081/96); HPLC (De Noni et al., 1996); and ELISA (Anguita et al., 1996; Haza et al., 1997) are worth mentioning. However, inmunological and electrophoretic methods are often not suitable for food products with complex matrices, being also significantly less sensitive in heat-treated material. Chromatographic methods detect differences in the percentages of the fatty acids, but the method is rather laborious (Branciari et al., 2000).
More recently, genetic techniques have been applied for species differentiation and have proved to be reliable, sensitive, and fast. Today, PCR is the most widely used genetic technique for the identification of the species of origin in food, especially in meat products (Chikuni et al., 1994; Koh et al., 1998; Matsunaga et al., 1999; Rodríguez et al., 2003). In contrast, application of PCR-based techniques to the authentication of dairy products has been very limited.
Milk from healthy mammary glands contains a large number of somatic cells (leukocytes and epithelial mammary cells). Recent studies have shown that it is possible to use these cells as a source of DNA, which can be consistently amplified by PCR to discriminate species (Lipkin et al., 1993; Amills et al., 1997; Maudet and Taberlet, 2001). The aim of the present study was to develop a rapid PCR-based method for the detection of cows milk in sheeps and goats milk mixtures. The assay is based on the amplification of a cow-specific fragment on mtDNA of the 12S rRNA gene and the visualization of PCR products on agarose gels. This work may provide a specific, sensitive, and inexpensive alternative to other existing methods.
| MATERIALS AND METHODS |
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Two series of binary milk mixtures of cows milk in sheeps or goats milk were prepared for further DNA extraction and PCR analysis. For each series, 6 different cow milk percentages containing 0.1, 0.5, 1, 5, 10, and 100% (vol/vol) were prepared in a final volume of 1 mL. Samples analyzed included raw, pasteurized (65°C, 30 min), and sterilized (121°C, 20 min) milk mixtures.
DNA Extraction
Total cellular DNA was extracted from raw and heat-treated milk mixtures using a Wizard DNA cleanup kit (Promega, Madison, WI). Previously, somatic cells were recovered from milk by the use of a milk clearing solution (0.15 M N-[2-Acetamido]-2-iminodiacetic acid (ADA) (Sigma-Aldrich GmbH, Steinheim, Germany), 0.5% wt/vol Triton X-100 (Sigma-Aldrich), and 0.01% wt/vol uniform polystyrene particles (size 0.787; Bangs Laboratories, Inc., Fishers, IN).
The extraction procedure was performed as follows: 0.5 mL of the clearing solution was added to 1 mL of the milk sample. Samples were mixed by inverting them 10 times before they were centrifuged at 15,000 xg in a microcentrifuge for 5 min. The result was a cream pad on the top of a clear supernatant. Both the pad and the supernatant were carefully removed, and the pellet left at the bottom of the tube was resuspended in 860 µL of extraction buffer (pH 8.0; 10 mM Tris, 150 mM NaCl, 2 mM EDTA, and 1% SDS), 100 µL of 5 M guanidine hydrochloride, and 40 µL of 20 mg/mL proteinase K (Boehringer Mannheim GmbH, Mannheim, Germany). The samples were incubated overnight at 55°C with shaking at 60 rpm (C24KC; New Brunswick Scientific Co., Edison, NJ), and they were left to cool at room temperature. Five hundred microliters of chloroform (Sigma-Aldrich) were added to the lysate before centrifugation at 13,000 rpm for 10 min. The clear aqueous supernatant obtained after the centrifugation (500 µL) was used to purify the DNA using the Wizard DNA cleanup system kit (Promega) with a vacuum manifold, according to the manufacturers instructions. Finally, the DNA was eluted in 100 µL of sterile deionized water, and its concentration was determined by spectrophotometry at 260 nm.
PCR Amplification of a Conserved 12S rRNA Gene Fragment from Cows, Sheeps, and Goats Milk
Primers 12S-FW (5'-GGTAAATCTCGTGCCAGCCA-3') and 12S-REV (5'-TCCAGTATGCTTACCTTGTTAC-GAC-3') were designed for the amplification of a 12S rRNA conserved gene fragment, based on sequences available in the Genbank/EMBL database for various animals such as pig, cow, sheep and goat (Accession numbers AJ002189, J01394, NC_001941, and M55541, respectively). This set of primers was expected to produce amplicons of the same length (approximately 720 bp) in the 3 species analyzed in this work.
For PCR amplification, each reaction mixture (50 µL) contained 100 ng of template DNA, 2 mM MgCl2, 5 pmol of each primer, 200 µM of each dNTP, and 2U of Tth DNA polymerase (Biotools, Madrid, Spain) in a reaction buffer containing 75 mM Tris-HCL, (pH 9.0), 2 mM MgCl2, 50 mM KCL, 20 mM (NH4)2 SO4, and 0.001% BSA. Amplification was carried out in a Progene Thermal Cycler (Techne Ltd., Cambridge, UK), programmed to perform a denaturation step of 93°C for 2 min, followed by 35 cycles consisting of 30 s at 93°C for denaturation, 30 s at 63°C for primer annealing, and 45 s at 72°C for extension. The last extension step was 5 min longer.
PCR products (10 µL) were mixed with 2 µL gel loading solution (Sigma-Aldrich) and electrophoresed in a 1.5% D1 (Hispanlab S.A., Torrejón, Spain) agarose gel, containing 1 µg/mL ethidium bromide in Tris-acetate buffer (0.04 M Tris-acetate and 0.001 M EDTA; pH 8.0) for 45 min at 100 V. The resulting DNA fragments were visualized by UV transilumination and analyzed using Geldoc 1000 UV Fluorescent Gel Documentation System-PC (Bio-Rad Laboratories, Hercules, CA).
Purification and Sequencing of PCR Products
Polymerase chain reaction products (90 µL) of the expected length obtained from cows, sheeps and goats milk using oligonucleotides 12S-FW and 12S-REV were purified with the Qiaquick gel extraction kit (Qiagen GmbH, Hilden, Germany) according to the manufacturers instructions. The DNA was eluted in 30 µL of sterile distilled water. The concentration of the PCR product was estimated by agarose gel electrophoresis using a standard (Mass Ruler; Bio-Rad) as reference marker. A Geldoc 1000 System-PC (Bio-Rad) was used for that purpose.
Sequences were determined at the DNA Sequencing Center (Facultad de Farmacia, Universidad Complutense, Madrid, Spain). The DNA sequencing was accomplished using dRhodamine terminator cycle sequencing ready reaction kit (Perkin-Elmer/Applied Biosystems Division, Foster City, CA) in an ABI Prism model 377 DNA sequencer (Perkin-Elmer).
Sequence analysis and alignments were performed using the Wisconsin Package, version 9.0 (Genetics Computer Group, Madison, WI).
Design of Cow-Specific Primers and Amplification of Selected DNA Fragments from Milk Samples
Information obtained after alignment of cow, sheep, and goat 12S rRNA gene sequences was used to design the following primer pair, potentially suitable for the amplification of a cow-specific 223-bp DNA fragment:
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common to the 3 species analyzed in this work, and
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specific for cow.
The specifity of the primer set was first checked by Genebank/EMBL database FASTA program and was confirmed by challenging it with milk samples of different breeds of the 3 considered species: cow ("Frisona", "Pardo Alpina", "Rubia Gallega", "Asturiana", and "Avileña"), sheep ("Merina", "Manchega", "Lacha", "Churra", "Castellana", and "Carranzana"), and goat ("Murciana", "Majorera", and "Palmera") in preliminary PCR experiments. Once assessed the specificity of the primers and raw and heat-treated milk binary mixtures (cow in sheep and cow in goat) were tested for DNA amplification.
Double-stranded amplifications were carried out in a final volume of 50 µL containing 100 ng of template DNA, 2 mM MgCl2, 10 pmol of each primer, 200 µM of each dNTP, and 2U of Tth DNA polymerase (Biotools) in a reaction buffer containing 75 mM Tris-HCL (pH 9.0), 2 mM MgCl2, 50 mM KCL, 20 mM (NH4)2 SO4, and 0.001% BSA. Amplification was carried out in a Progene Thermal Cycler (Techne Ltd.) programmed to perform a denaturation step of 93°C for 2 min, followed by 40 amplification cycles that were performed with the following step-cycle profile: strand denaturation at 93°C for 30 s, primer annealing at 63°C for 30 s, and primer extension at 72°C for 45 s. The last extension step was 5 min longer.
The detection limit of the method was estimated by agarose gel electrophoresis of the PCR products obtained from each milk binary mixture containing percentages of cows milk ranging from 0.1 to 100% (vol/vol).
| RESULTS |
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As can be seen in Figure 2
, DNA extracted from cows milk was successfully amplified with 12SM-FW /12SBT-RV primer pair, giving rise to the expected PCR fragment, whereas no amplification products were obtained with DNA from sheep and goat milk samples. For each species, DNA from different breeds was analyzed, confirming the usefulness of the selected primer pair for the specific identification of cows target sequence.
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| DISCUSSION |
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Many PCR-based assays use DNA targets in the mitochondrial genome. These non-nuclear targets possess several advantages over nuclear genes (Unseld et al., 1995): They are generally more abundant in any given sample than single-copy nuclear genes, and, because mitochondrial DNA has a relatively high mutation rate compared with nuclear DNA, they contain a greater accumulation of point mutations that can be used to better define species differences. Moreover, mitochondrial DNA tends to be inherited through the maternal germline, and the resulting lack of heterozygosity in the alleles under study simplifies analysis (Kocher et al., 1989). Therefore, the mitochondrial encoded gene for 12S rRNA was selected in this work as the target sequence for species identification.
Sequence comparison of 12S rRNA gene available in the GenBank/EMBL database for several animal species permitted the design of 2 conserved primers, 12S-FW and 12S-REV, which amplified a DNA fragment of approximately 720 bp from cows, sheeps, and goats milk (Figure 1
). The identity of the amplicons was confirmed after purifying and sequencing the PCR fragments obtained from 2 individuals of each considered species. Cow, goat, and sheep sequences were 100% identical to their homologous obtained from the Gen-Bank/EMBL (data not shown).
Species-specific PCR has shown to be a suitable method to control food authenticity because a specific target sequence can be detected even in matrices containing a pool of heterogeneous genomic DNAs, such as milk mixtures or other dairy products (Tartaglia et al., 1998). However, the extraction of inhibitor-free DNA from milk samples, capable of being amplified optimally by PCR, has been reported as a common problem (Lipkin et al., 1993; Amills et al., 1997; Murphy et al., 2002). In the present work, an approach was developed for removing PCR inhibition factors from milk, consisting of a "milk clearing solution" previously used in our laboratory for the collection of bacteria from raw milk samples (Gutiérrez et al., 1997). The milk clearing reagent also facilitated the recovery of somatic cells from milk without components that inhibit the PCR. This procedure, followed by a DNA extraction protocol based on a commercial kit, proved to be highly efficient, yielding good quality DNA even when milk samples were submitted to severe heat treatments.
To make the detection unequivocal, a reverse primer specific for cow (12SBT-REV) was designed following sequence alignment and comparison. As expected from sequence analysis, the 12SBT-REV primer, together with the forward 12SM-FW conserved oligonucleotide, amplified a 223-bp fragment from cows DNA, whereas no amplification bands were detected in sheep and goat species (Figure 2
).
Once the specificity of the primer pair was confirmed, PCR amplification was performed on binary raw milk mixtures (cow in sheep and cow in goat) comprising 0.1, 0.5, 1, 5, 10, and 100% (vol/vol) of cows milk to determine the detection limit of the assay in milk samples. It was observed that the lower the percentage of the target species (cow) in the mixture, the fainter the band obtained in the PCR with the cow-specific primer pair. The detection limit (lower milk percentage yielding visible DNA amplification) of the assay was 0.1% of cows milk in both cow-sheep (Figure 3
) and cow-goat (Figure 4
) milk mixtures.
Finally, the effect of thermal treatment of milk on the techniques ability to detect species was studied through the analysis of experimentally pasteurized and sterilized binary milk mixtures. The results obtained with heat-treated samples showed that the banding pattern and lower detection limit of cows milk in the PCR developed were not substantially modified with respect to raw milk mixtures (Figures 5
and 6
).
In conclusion, the PCR method described herein is a useful and straightforward approach for the detection of low levels of cows milk substitution (0.1%) in milks of a higher commercial value. Moreover, the technique offers high sensitivity and specificity, with the great advantage that it can also be applied in thermally or otherwise processed milk products with extensive protein denaturation. Therefore, this PCR technique may prove useful for food inspection services to trace the species origin of milk mixtures or cheese products, thereby protecting the traditional manufacturers and consumers against food product adulteration and misrepresentation.
| ACKNOWLEDGEMENTS |
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Received for publication December 19, 2003. Accepted for publication March 29, 2004.
| REFERENCES |
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2 -caseins. Milchwissenschaft 45:708711.
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