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1 Department of Food Science and Agricultural Chemistry, McGill University, 21,111 Lakeshore Road, Ste-Anne-de-Bellevue, QC, Canada H9X 3V9
2 Food Research & Development Centre, Agriculture and Agri-Food Canada, St-Hyacinthe, QC, Canada J2S 8E3
Corresponding author: B. H. Lee; e-mail: blee{at}macdonald.mcgill.ca.
| ABSTRACT |
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Key Words: bile salt hydrolase purification Bifidobacterium
Abbreviation key: BSH = bile salt hydrolase, FPLC = fast protein liquid chromatography, HIC = hydrophobic interaction chromatography, IEC = ion-exchange chromatography, IEF = isoelectric focusing, LAB = lactic acid bacteria, pI = isoelectric point, SEC = size exclusion chromatography
| INTRODUCTION |
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Recent screening analyses with many lactic acid bacteria (LAB) strains, conducted in our laboratory as well as others, revealed that BSH activity is widely distributed in many species of lactobacilli including Lactobacillus acidophilus (Corzo and Gilliland, 1999; Kim et al., 1999; Ahn et al., 2003), Lactobacillus johnsonii (Elkins and Savage, 1998), Lactobacillus gasseri (Usman and Hosono, 1999), and Lactobacillus plantarum (De Smet et al., 1994) and almost every species of Bifidobacterium (Tanaka et al., 1999; Grill et al., 2000b). Interestingly, many strains of bifidobacteria possess higher BSH activity than other probiotics. In spite of this wide distribution and high activity of BSH enzyme in bifidobacteria, only 2 BSH have been purified so far from B. longum BB536 (Grill et al., 1995b) and B. longum SBT 2928 (Tanaka et al., 2000).
To investigate some biochemical characteristics of BSH in Bifidobacterium spp., BSH were purified from B. bifidum ATCC 11863, B. infantis KL412, B. longum ATCC 15708, B. longum KL507, and B. longum KL515. From the profiles of native PAGE followed by BSH activity staining and the elution profiles from an anion-exchange column, three types (A, B, and C) of BSH enzyme were identified. Some properties and purification methods of 3 different types of BSH from bifidobacterial strains are described in this study.
| MATERIALS AND METHODS |
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Enzyme and Protein Assays
The cell-free extracts were prepared by sonicator (Sonic Dismembrator 550, Fisher Scientific, Mississauga, ON, Canada) for 5 min at level 4 under constant cooling. The supernatant was collected by centrifugation (15,000 x g, 30 min) and stored at -20°C. The BSH activity was determined by measuring the amount of amino acids resulting from hydrolysis of the amide bond of bile salts using a ninhydrin assay (Tanaka et al., 2000). The hydrolysis rate of conjugated bile salts at 37°C was measured in a sodium phosphate buffer (0.1 M, pH 6.5). One unit of BSH activity was defined as the amount of enzyme that liberated 1 µmol of amino acid from the substrate per minute. Specific activity was defined as units/mg of protein. Protein concentrations were determined by the Bio-Rad protein assay (Bio-Rad, Mississauga, ON, Canada) using BSA (Sigma Chemical Co., St. Louis, MO) as a standard.
Activity Staining on Acrylamide Gel
The crude enzymes were loaded and electrophoresed in a nondenaturing 10% (wt/vol) acrylamide gel with Laemmli buffer (Laemmli, 1970) omitting the SDS (Grill et al., 2000a). Partially purified CBAH (cholylglycine hydrolase) originating from Clostridium perfringens was purchased from Sigma Chemical Co. For comparison purposes, some BSH-positive strains of Lactobacillus species were selected, and their cell-free extracts were prepared. Bile salt hydrolase activity on the gel was detected by washing in a 0.4 M sodium acetate buffer (pH 4.5) and then incubating the gel at 37°C in a reaction mixture (10 mM sodium taurodeoxycholate in 50 mM sodium phosphate buffer, pH 5.5). The BSH activity band in the gel was identified by the formation of a white precipitate of deoxycholic acid at the position of the enzyme.
Enzyme Purification
Hydrophobic interaction chromatography (HIC).
The cell-free extracts were precipitated at 4°C with ammonium sulfate (40 to 80% saturation); the pellet was resuspended in a 50 mM sodium phosphate buffer (pH 7.0). Portions (1 mL) of concentrated sample were applied to HIC columns (HiTrap Phenyl FF or HiTrap Octyl FF, Amersham Pharmacia Biotech Inc., Baie dUrfé, Québec, Canada) and eluted at a flow rate of 1 mL/min by a linear ammonium sulfate gradient (0.8 to 0 M) in 50 mM sodium phosphate buffer (pH 7.0). Fractions (2 mL) were collected and assayed for BSH activity.
Anion-exchange chromatography.
The active BSH fractions from HIC were pooled, desalted, and further concentrated using the Ultrafree-15 centrifugal filter unit (30 MWCO, Millipore; www.millipore.com). The active fraction obtained from HIC was applied to an anionic-exchange column (Mono Q HR 5/5, Amersham Pharmacia Biotech Inc.) equilibrated with buffer A (50 mM bis-Tris propane buffer, pH 6.5). Elution was performed using a linear gradient of 1 M sodium chloride in buffer A at a flow rate of 0.5 mL/min, and 1-mL fractions were collected. Fractions exhibiting BSH activity were pooled and assayed for protein and enzymatic activity.
Enzyme Purity and Molecular Mass Estimation
Protein purity and subunit molecular mass were estimated by subjecting aliquots from each purification step to SDS-PAGE using prestained marker proteins (New England BioLabs Inc., Mississauga, Ontario, Canada). Gels were stained with Coomassie brilliant blue R-250. The native molecular mass was determined by gel filtration chromatography (Superose 12 HR 10/30, Amersham Pharmacia Biotech Inc.) using LMW and HMW gel filtration calibration kits purchased from Amersham Pharmacia Biotech Inc. The mobile phase used was 0.1 M sodium phosphate-0.15 M NaCl (pH 7.0), and the flow rate was 0.5 ml/min.
Determination of Isoelectric Point (pI)
To determine the isoelectric point of BSH enzymes, the purified enzymes were applied to an isoelectric focusing unit (IEF) (Multiphore II IEF system, Amersham Pharmacia Biotech Inc.) equipped with Immobiline DryStrip. A broad pH range strip (pH 4.0 to 7.0, 13 cm) was used for the first isoelectric focusing (IEF), and a narrow pH range strip (pH 4.0 to 5.0, 18 cm) was used for the second IEF to measure their precise isoelectric points.
Determination of the N-Terminal Amino Acid Sequence
Bile salt hydrolase was purified by consecutive HIC and Mono Q chromatography. The resulting active fractions were pooled, concentrated, and applied to a mini electrophoresis unit (Bio-Rad). After separation, the proteins were transferred onto a polyvinylidene fluoride membrane and stained with Coomassie brilliant blue R-250, and the BSH protein was cut out and used for sequencing. N-Terminal amino acid sequencing was performed with a Procise Protein Sequencing System (Applied Biosystems, Foster City, CA).
Substrate Specificity
To determine the substrate specificity of purified enzymes, the six major human bile salts were selected (Tanaka et al., 2000). Glycocholic acid, glycodeoxycholic acid, glycocheno deoxycholic acid, taurocholic acid, taurodeoxycholic acid, and taurochenodeoxycholic acid were obtained from Sigma Chemical Co. The rate of hydrolysis of conjugated bile salts was measured at 37°C and at pH 6.5, which is similar to that of the small intestine in a healthy human (Corzo and Gilliland, 1999). The released amount of amino acid from the substrates by enzymatic reaction was measured by ninhydrin assay and compared with the standard curve prepared by using either glycine or taurine. These experiments were conducted in triplicate.
| RESULTS |
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Purification of BSH
To investigate the biochemical characteristics of the enzymes, BSH of bifidobacterial strains were purified by a fast protein liquid chromatography (FPLC) system equipped with hydrophobic interaction, anion exchange, and size exclusion chromatography columns. Concentrated cell-free extracts from ammonium sulfate fractionation (40 to 80% saturation) were passed through HIC columns. Two types of BSH showed different elution profiles from HIC columns, suggesting that they might have different hydrophobic characteristics on the protein structure. Each enzyme seems to show different selectivity from other proteins depending on the HIC columns. Whereas a type A enzyme showed a better selectivity with aliphatic ligand columns (HiTrap Octyl FF or Butyl FF), a type C enzyme was more efficiently separated on aromatic ligand columns (HiTrap Phenyl FF). In each combination, the BSH were eluted near the end of the ammonium sulfate gradient with a good resolution.
The pooled fractions from the HIC column were loaded onto a Mono Q anion-exchanger column after the buffer was changed with 50 mM bis-Tris propane buffer (pH 6.5). From the Mono Q column, BSH were eluted differently depending on the strain. For the type C BSH enzyme, the activity was eluted at an NaCl concentration between 0.12 and 0.16 M (Figure 2B
). In the case of type A, the protein was eluted between 0.23 and 0.27 M NaCl (Figure 2A
) with an exception of BSH from B. bifidum ATCC 11863, which was eluted around 0.35 M NaCl (data not shown). Based on this different elution profile from Mono Q, B. bifidum ATCC 11863 was reclassified as type B.
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pI Determination and N-Terminal Amino Acid Sequencing
By using an IEF system equipped with a broad pH range strip (pH 4.0 to 7.0, 13 cm), the approximate pI values were found to be between pH 4.0 ~ 5.0. To measure more accurate pI values, a narrow pH range strip (pH 4.0 to 5.0, 18 cm) was used. Among 4 BSH enzymes tested, only type B BSH from B. bifidum ATCC 11863 had a pI of 4.45 and the other BSH (types A and C) from B. longum KL507, B. longum KL515, and B. infantis KL412 had similar pI values around 4.65 (Figure 4
).
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Substrate Specificity
Bile salt hydrolase enzymes purified from Bifidobacterium strains showed a broad substrate range for 6 major human bile salts. Type A and C BSH enzymes showed the highest enzyme activity with glycodeoxycholic acid (defined as 100% activity), and they exhibited a preference for glycine-conjugated bile salts over taurine-conjugated forms (Figure 5
). This tendency of preference was apparent in the case of type C than type A, but no difference was observed for di- or trihydroxyconjugated bile salts.
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| DISCUSSION |
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Four different electrophoretic migration patterns were revealed from the genus Lactobacillus. Interestingly, 5 consecutive BSH activity bands were identified from L. acidophilus ATCC 43121 (lane 4 in Figure 2
.). Corzo and Gilliland (1999) reported that the intracellular BSH enzyme from this strain had higher activity than other strains tested, and the molecular mass of the enzyme was estimated as 126 kDa by gel filtration chromatography. Further study must be carried out to investigate whether those 5 consecutive activity bands are due to hetero-isoenzymes combined with two different subunits
and ß as reported in L. johnsonii 100-100 (Lundeen and Savage, 1992; Elkins et al., 2001).
The electrophoretic migration of BSH enzymes from Bifidobacterium strains was higher than that of Clostridium and Lactobacillus. Based on the electrophoretic mobility from the activity staining, Grill and Schneider (1997) reported 5 classes of BSH from animal and human origin strains of Bifidobacterium. They proposed that the different property of BSH electrophoretic mobility might be used to differentiate bifidobacterial species, in particular, differentiation between B. longum and B. animalis was proposed. From human origin strains tested in this study, 2 major types (A and C) were revealed. The mobility of the major band of type A BSH (lane 3 in Figure 2
) was lower than that of type C (lane 2 in Figure 2
).
Chromatographic steps were optimized in this study using an FPLC system equipped with 3 different types of columns for the purification of three different types of BSH from bifidobacteria strains. Hydrophobic interaction chromatography was appropriate as the first step of the purification, since no buffer change was necessary after ammonium sulphate precipitation. Furthermore, HIC showed high selectivity and high resolution for the BSH enzyme at the end of ammonium sulphate, and the high purification fold was obtained after this chromatographic step (Table 1
). The BSH enzyme was eluted from the HIC column at a low concentration of ammonium sulphate, suggesting that the BSH enzyme belongs to a group of hydrophobic proteins. Considering some hydrophobic characteristics in their steroid ring structure of the substrates (bile salts), it is speculated that some hydrophobic amino acid residues on the surface of a BSH enzyme play a major role in binding via hydrophobic interactions. The similar phenomenon was reported by Alkema et al. (2002) from penicillin acylase, which has been proposed as the same Ntn-hydrolase superfamily (Suresh et al., 1999; Oinonen and Rouvinen, 2000).
Three types of BSH (A, B, and C) showed different elution profiles from anion exchanger Mono Q, suggesting that BSH enzymes of different types have some differences in their amino acid compositions, charge characteristics, as well as their tertiary and quaternary protein structures. Such a difference in the elution pattern has been reported previously. Where BSH from B. longum BB 536 was eluted between 0.11 and 0.15 M NaCl (Grill et al., 1995b), BSH from B. longum SBT 2928 was eluted between 0.33 and 0.36 M NaCl using Na-phosphate buffer system (Tanaka et al., 2000). Compared to Na-phosphate buffer (an anionic buffer with Na+ as counter-ions), bis-Tris propane (a cationic buffer with Cl- as counter-ions), which was used in this study, eluted proteins more efficiently from the anion-exchanger column. A different elution pattern from the Mono Q column was confirmed by measuring the fructose-6-phosphate phosphoketolase (F6PPK) enzyme activity as a marker protein. Regardless of types, F6PPK enzyme, which is a unique enzyme in bifidobacteria, was eluted at NaCl concentration between 0.30 and 0.34 M. This observation is similar to that made for the F6PPK enzyme, which was reported by Grill et al. (1995a).
The subunit molecular masses estimated by SDS-PAGE analyses were around 35 kDa for all BSH enzymes in this study. Numerous enteric bacteria express BSH activity, and there are differences in the molecular structure (trimeric, tetrameric, or hexameric proteins with a molecular mass of 105,000 to 250,000) (Stellwag and Hylemon, 1976; Gopal-Srivastava and Hylemon, 1988; Coleman and Hudson, 1995; Grill et al., 1995b). The BSH of type C showed a little lower native molecular mass (130 to 140 kDa) than that of type A and B (140 to 150 kDa). This is in good agreement with those of other BSH enzymes reported previously and indicates that the native enzyme is a tetramer (Tanaka et al., 2000).
The measured pI values were close to the theoretical pI of 4.51 for the deduced protein of BSH from B. longum SBT 2928 (Tanaka et al., 2000). Isoelectric points of BSH enzymes from the genus Bifidobacterium were found to be lower than the values reported from the others; 5.29 for BSH from L. acidophilus KS-13 (GenBank accession number AAD03709), 4.98 from L. gasseri (GenBank accession number ZP_00046789), 5.05 and 4.88 from L. johnsonii 100-100 alpha and beta (GenBank accession numbers AAG22541 and AAC34381, respectively), and 5.12 from L. plantarum WCFS1 (GenBank accession number NP_786739). The lower pI value of BSH from bifidobacterial strains implies that the BSH enzymes contain a higher portion of negatively charged residues (Asp + Glu) and a lower portion of positively charged residues (Arg + Lys). In fact, the ratio of negatively charged residues to positively charged residues is 2.05 (41/20) and 1.21 (35/29) in the amino acid composition of the BSH enzymes from B. longum and L. acidophilus, respectively.
Even though the last N-terminal amino acid was not identified under the experimental condition used, the Cys residue at the N-terminal end was highly conserved in all BSH enzymes except one BSH enzyme purified from Xanthomonas maltophilia (Dean et al., 2002). Elkin et al. (2001) and Tanaka et al. (2000) have proposed that the Cys residue at the N-terminal end of the BSH enzyme as one of the active sites of the enzyme. From a protein homology comparison, these N-terminal sequences were homologous to those of several lactobacilli as well as Clostridium perfringens. In addition, an amino acid motif, XYFGRNLDX, which was highly conserved within all BSH enzymes reported in lactobacilli and bifidobacteria, was presented in both N-terminal sequences of type A and type C enzymes.
In this study, BSH from all strains of Bifidobacterium showed a higher deconjugation rate on glycine conjugated bile salts than on taurine conjugated forms. Considering the fact that the majority of human bile salts are glycine conjugated forms, BSH enzymes from bifidobacterial strains might be important in the deconjugation of bile salt in the human intestine.
From the foregoing discussion, one may conclude that the optimized purification conditions established with HIC and Mono Q columns were very effective in purifying three types of active BSH from bifidobacteria strains. Purified BSH enzymes from different strains showed some type-specific characteristics, and they had some different characteristics from those of other genus and species. Migration patterns on the PAGE gel and elution profiles from the anion-exchange column described in this study could be useful for the investigation of the similarities and differences among BSH enzymes from different genus and species. Because almost every strain of bifidobacteria possesses BSH enzyme activity at a significant level, and they have some genus-specific and type-specific characteristics, this phenotypic trait may be used as a means of phenotypic characterization of Bifidobacterium strains.
For the molecular characterization of type A, B, and C enzymes, the cloning of the BSH gene is currently being carried out. Once the nucleotide sequences for each type of bsh gene is obtained from the cloning experiment, it will provide some information about the phylogenetic relationship within the genus of Bifidobacterium as well as other genus and species of enteric bacteria that are harboring bsh gene. Furthermore, it will allow us to develop some genus-specific and type-specific probes based on the BSH locus and to use them as useful identification tools.
| ACKNOWLEDGEMENTS |
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Received for publication May 13, 2003. Accepted for publication July 23, 2003.
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