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Department of Animal Sciences Ohio State University, Columbus 43210
| ABSTRACT |
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Key Words: continuous culture fermenters 2-Hydroxy-4-(methylthio) butanoic acid methionine bacterial community analysis rumen
Abbreviation key: BCVFA = isobutyrate, isovalerate, and valerate, HMB = 2-hydroxy-4-(methylthio)-butanoic acid, NANBN = nonammonia-nonbacterial nitrogen, RIS = ribosomal intergenic spacer, rDNA = ribosomal DNA, RIS-LP = RIS-length polymorphism
| INTRODUCTION |
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Microbial protein reaching the duodenum represents the largest contribution of protein for ruminant animals (Firkins, 1996), and has an AA profile more similar to that of both milk and lean tissue than that of most protein sources used as animal feeds (NRC, 2001). Peptides and AA have stimulated microbial protein synthesis when substituted for ammonia in vitro (Russell and Strobel, 1993) and in vivo (Rooke and Armstrong, 1989). Streptococcus bovis, an active proteolytic bacterium, spilled less energy as heat when AA were included in the medium, suggesting more efficient use of carbon and energy when AA were provided (Russell and Strobel, 1993). Patterson and Kung (1988) determined that bacteria incorporate Met into cellular material, regardless of precursor (dl-Met, HMB, or HMB esters, salts or amides). Gil et al. (1973a, 1973b) found that supplying HMB in the urea-containing medium greatly enhanced rate of growth of rumen bacteria on glucose or cellulose and was not being used as an energy source. Prevotella ruminicola 23, Butyrivibrio fibrisolvens and Selenomonas ruminantium are stimulated by cysteine (Cotta and Russell, 1982), which can be produced from Met (Stipanuk, 2000). The rumen bacterium B. fibrisolvens degrades cellulose, hemicellulose, and protein in the rumen and can make up a large portion of the rumen microorganisms (Van Soest, 1994). P. ruminicola is a predominant hemicellolytic organism (Dehority, 1991). If these organisms are provided with supplemental HMB, causing an increase in overall numbers of fibrolytic organisms, fiber digestibility could be improved.
Yu and Mohn (2001) developed a composite method for investigating bacterial community structure in an aerated lagoon. The method is based on analyses of PCR amplicons containing the ribosomal intergenic spacer (RIS) region and its flanking partial 16S rRNA gene. Ribosomal DNA (rDNA) is the region of DNA that encodes the rRNA genes. The16S-23S ribosomal DNA-RIS region has a highly variable length, and can hence be used as a marker to distinguish different bacterial species.
The hypotheses for this trial were that HMB supplementation would increase microbial growth in continuous culture over an unsupplemented control by either sparing Met precursors for more efficient protein synthesis or by shifting bacterial species. The objective of this study was to quantify the effects on microbial populations supplemented with HMB by measuring flow of N, digestibility of OM, ADF, NDF, and hemicellulose, and VFA production in continuous culture. Changes in the microbial community profile were analyzed by RIS length polymorphisms (RIS-LP).
| MATERIALS AND METHODS |
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Sample Collection and Analysis
On d 5, 10% enriched (15NH4)2SO4 was added to the fermenters for use as a microbial marker. A sample of effluent was taken prior to the primed, continuous infusion for background 15N analysis. One daily sample of the effluent was taken on d 8, 9, and 10 and composited by fermenter for analysis. All samples were immediately frozen at -20°C. Bacteria were separated from feed particles using a Waring blender and straining through two layers of cheesecloth. Differential centrifugation was used to first separate the bacteria from the feed (15 min at 500 x g) and then separate the bacteria from the liquid supernatant (15 min at 23,300 x g). Samples remained frozen until analysis. Effluent samples were analyzed for N using the Kjeldahl method and for ADF and NDF (Van Soest, 1991). Samples were acidified using 3 ml of 6 N HCl per 50 ml of sample to stop fermentation prior to analysis for VFA (Firkins et al., 1990) and NH3-N (Chaney and Marbach, 1962). Sub-samples of effluent to be used for 15N analysis were raised to a pH of approximately 9 using 25% NaOH in order to volatilize ammonia from the sample. Bacterial and effluent samples were analyzed for 15N by the Stable Isotope Laboratory (Utah State University, Logan). The analyses were performed by continuous-flow direct combustion and mass spectrometry using a Europa Scientific SL-2020 (PDZ Europa, Cheshire, England) system. Nitrogen-15 in ammonia samples was determined at the University of Illinois (Firkins et al., 1992).
DNA Extraction and PCR.
Three samples per period were collected directly from the fermenters and frozen at -80°C. Total genomic DNA was extracted from the thawed composite samples using the bead beating method (Yu and Mohn, 1999) followed by purification of the DNA using a QIAamp column (Qiagen, Valencia, CA). The DNA samples were used in PCR amplification with primers S926f (5'-CTYAAAKGAATTGACGG-3') and L189r (5'-TACTGAGATGYTTMARTTC-3') as described by Yu and Mohn (1999). The resultant PCR products (amplicons) contain the complete RIS and parts of the flanking rDNA, (ca. 600 bp of 16S rDNA and 190 bp of 23S rDNA). The PCR conditions were as follows: initial denaturation at 94°C for 3 min, annealing at 45°C for 1.5 min, and extension at 72°C for 2.5 min. Subsequent cycles consisted of a 1.5-min denaturation step at 94°C, a 1.5-min annealing step at 45°C, and a 2-min extension step at 72°C. After 30 cycles, there was a final 7-min extension step at 72°C.
Phylogenetic Analysis Based on RIS-LP.
Ribosomal DNA-RIS fragments amplified by PCR were separated on a 4% polyacrylamide (37:1) gel, and the gel was stained with GelStar nucleic acid stain (BioWhittaker, Inc., Walkersville, MD). The RIS-LP banding patterns were documented using a FluorChem Imaging System (Alpha Innotech Corporation, San Leandro, CA). The gel image was then exported into the GelCompar II analysis software in the BioNumerics package (BioSystematica, Devon, UK) for cluster analysis and dendrogram construction. The UPGMA method in the software was used for dendrogram construction.
Statistical Analysis
Data were analyzed using Proc GLM of SAS (1999) according to the following model:
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where:
| Yijk | = | is the dependent, continuous variable,
| µ | = | is the overall population mean,
| Ti | = | is the fixed effect of the ith treatment (i = 1, 2, 3, 4),
| Fj | = | is the fixed effect of the jth fermenter (j = 1, 2, 3, 4),
| Pk | = | is the fixed effect of the kth period (k = 1, 2, 3, 4), and
| eijk | = | is the residual error, assumed independent and ~ N(0,
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Two preplanned contrasts were used to determine linear or quadratic response to 0, 0.055, and 0.110% of HMB, and a third compared the effects of similar concentrations of methionine supplied as dl-Met (0.097%) vs. HMB (0.110%). The Proc GLM procedure of SAS was used for regression analysis of data having significant quadratic effects to estimate peaks or nadirs.
| RESULTS AND DISCUSSION |
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Nitrogen Fluxes and Ammonia Utilization
According to the NRC (2001), the control diet would supply 3319 g/d of RDP if fed to a 650-kg lactating cow producing 45 kg of milk per day with a DMI of 25.9 kg/d. The suggested requirement for RDP is 2516 g/d. Thus, our diet had an approximate excess of RDP of 32%, and therefore should not be limiting for microbial growth. Nitrogen fluxes and ammonia utilization are reported in Table 2
. Addition of Met as either HMB or dl-Met had no effect on effluent flows of NH3-N, NAN, bacterial N, nonammonia-nonbacterial nitrogen (NANBN), or NANBN as a percentage of N intake. If Met acts as a growth stimulant to bacteria in a situation in which Met is rate-limiting, an increase in bacterial N flow would be expected. Total RUP flow would either increase or remain the same. Kajikawa et al. (2002) found that Met did not increase microbial growth rate or efficiency when added alone to mixed ruminal bacteria cultured in vitro. However, it was one of seven AA that were stimulatory when supplied together. All AA were provided in isonitrogenous proportions, and potential interactions were not considered. Gil et al. (1973a) found NH3-N concentrations in vitro were lower with Met supplemented as dl-Met or HMB over a control, whereas Bach and Stern (1999) found increased NH3-N and decreased NAN in continuous culture with supplemental Met. Vazquez-Anon et al. (2001) found no effects of HMB on NH3-N or NAN flows in continuous culture. Our results showed no difference in bacterial N flow from HMB supplementation, which is contrary to the findings of Vazquez-Anon (2001) and Gil et al. (1973a), who found increases in microbial CP synthesis with HMB, but results are in agreement with those of Bach and Stern (1999), who found no changes with dl-Met. Patton et al. (1970a) reported an increased flow of lipids that were serving as structural components related to microbial growth. They believed most of the additional lipid was associated with rumen protozoa. Because protozoa rapidly wash out of continuous culture fermenters of the type we used (Mansfield et al., 1995), effects on protozoa could not be determined. This may be why the expected increase in microbial protein has not been found with continuous culture systems (Bach and Stern, 1999) but has been found in in vitro systems without outflow such as those used by Patton et al. (1970a) and Gil et al. (1973a). Nitrogen outflows, expressed as a percentage of N intake, and microbial efficiency were not significantly different among the four treatments.
Ammonia-N concentrations were not different among the four treatments. However, there was a significant linear decrease (P = 0.032) in the amount of bacterial N obtained from NH3-N with amounts of HMB supplementation. Because of the quadratic effect of HMB concentration (P = 0.054), regression analysis was done and indicated that 0.0735% HMB supplementation of the diet would minimize the proportion of bacterial N obtained from NH3-N. There was also a trend (P = 0.10) for the bacteria receiving dl-Met to obtain a greater proportion of their N from ammonia than those receiving a similar amount of Met from HMB.
Volatile Fatty Acids
Volatile fatty acid concentration and total production are presented in Table 3
. Acetate concentration was not affected by HMB supplementation. Acetate concentration was higher in the dl-Met treatment than with HMB. Propionate decreased linearly in concentration from HMB supplementation but a quadratic trend (P = 0.13) was noted for production (data not shown), which was estimated to peak at 0.0470% HMB. These changes were apparent in the acetate:propionate ratio, which showed a significant quadratic effect of HMB concentration. The lowest estimated acetate:proprionate ratio would occur at 0.037% HMB. This calculated ratio of 3.35 is similar to that found at 0 and 0.055% when standard errors are considered. This indicates that HMB had basically no effect until more than 0.055% was fed, when a large increase in ratio occurs. Butyrate and isovalerate concentrations were not different. There were trends (P < 0.15) for a linear increase in production for isobutyrate and isovalerate (data not shown) in our trial with increasing concentration of HMB, and isobutyrate concentration increased linearly. Valerate concentration was affected quadratically by HMB, with estimated peak production at 0.0554%.
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Relationship of VFA Metabolism to N Synthesis
Changes in VFA production from HMB supplementation are indicative of an effect on rumen microorganisms. Possible causes for these effects are: 1) microbial populations are changing, 2) different biochemical pathways are becoming more favored, or 3) a combination of both. Three of the predominant cellulolytic rumen bacteria, Fibrobacter succinogenes, Ruminococcus flavefaciens, and R. albus require one or more of the branched-chain fatty acids (BCVFA) isobutyric, 2-methylbutyric, or isovaleric acids for the synthesis of valine, isoleucine, and leucine via reductive carboxylation and transamination of the fatty acid (Wallace, 1997). The decreased usage of these VFA for AA synthesis, indicated by increased production of isobutyrate and isovalerate with a decrease in utilization of NH3-N for bacterial N synthesis, could indicate a decrease in the population of microbes normally dependent on BCVFA for production of AA. A limitation of BCVFA growth factors seems unlikely, however, because fiber digestibility was not impaired in our study, and, in fact, ADF digestibility was numerically increased by HMB at 0.110%. It seems more likely that microbes were preferentially using other pathways to synthesize AA when HMB was infused in the fermenter. Met is normally synthesized using a pathway starting with oxaloacetate, an intermediate in the biosynthesis of many AA (Brock et al., 1994). Providing a readily available but slowly degradable source of Met may allow the cell to spare oxaloacetate for production of energy or de novo synthesis of other AA. Increased availability of oxaloacetate would also increase production of succinate, which is an intermediate step in the production of propionate (White, 2000). We observed a quadratic trend in propionate production with an estimated peak at 0.047% HMB in our study. These changes applied to an in vivo system could help to explain some of the effects on milk yield and composition commonly seen with feeding of HMB. Differences in VFA production may increase milk fat production and sparing of oxaloacetate could improve AA balance by providing more substrate for production of microbial CP.
RIS-LP Analysis
RIS-LP followed by cluster analysis based on pair-wise comparison of the banding patterns obtained from gel electrophoresis of rDNA-RIS amplicons provides a reliable and fast method for comparison of microbial community profiles in environmental samples. Distinct RIS-LP banding patterns were obtained from gel electrophoresis of the PCR amplicons (Figure 1
). The banding patterns showed that there were several distinct bands in each sample, including two to three major bands. These major bands represent the species that are the most abundant, possibly Butyrivibrio fibrisolvens, Megasphaera elsdenii, Prevotella ruminicola, and/or Selenomonas ruminantium. Cluster analysis showed that the treatments tended to group together, but no distinct pattern was detected because samples taken in the same period tended to cluster together irrespective of the treatment group from which the samples were collected, suggesting that period had a strong influence on bacterial community structure. Because each period was initiated by a new inoculation and the fermentations were controlled for pH and continuous feeding of highly processed feeds, the period effect might have hidden potential treatment effects. Alternatively, the treatments used in this experiment might not have caused a major shift in the community profile. Minor alterations in the community profile might be masked by the presence of large bands generated from species of bacteria that are usually present in large numbers in the inoculum. The use of genera- and species specific primers would allow more specific monitoring of the minor population changes.
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| CONCLUSIONS |
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| ACKNOWLEDGEMENTS |
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| FOOTNOTES |
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Corresponding author:
N. R. St-Pierre; e-mail
st-pierre.8{at}osu.edu.
Received for publication October 9, 2002. Accepted for publication February 11, 2003.
| REFERENCES |
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